Is it possible to do automatic wipes on moded servers? Eventually would it be possible to develop plugin for that?
There is plugin which woould remove data files from oxide.

Asking as would like to do wipes at the same time but due to work I can not perform them at same time.

Plugins can only modify data/config files, not delete/remove them or other filetypes. You would need to write an extension to handle modifying other filetypes.

Usually these are handled by web control panels (pterodactyl, Tcadmin etc) or via alternative scripts on the host machine.