I thought everything was working becasue I was getting the night bonuses but other players were not. 

I strated by checking permissions and I get my permissions from the default group like everyone else.
I reboot the server, reloaded the plugin but nothing changed. I decided to remove the plugin, re-add it, re-configure it and now Im like everyone else and no one gets night bonuses. 

Here is the config for night
"Night Bonus": {
"Points Per Hit At Night": {
"ACQUIRE": 20.0,
"MINING": 20.0,
"SKINNING": 20.0,
"WOODCUTTING": 20.0
},
"Points Per PowerTool At Night": {
"MINING": 1.0,
"WOODCUTTING": 1.0
},
"Resource Per Level Multiplier At Night": {
"ACQUIRE": 2.0,
"MINING": 2.0,
"SKINNING": 2.0,
"WOODCUTTING": 2.0
},
"Enable Night Bonus": true,
"Broadcast Enabled Bonus": true,
"Log Enabled Bonus Console": true
},

and this is a pic of the /stainfo at night https://gyazo.com/6b5d0c9b21cdca988a595211be8fe71c

The only plugin I have that modifies the day/night is Time Of Day. Any suggestions on how to fix or debug to find whats blocking the night bonus?

I have my points per hit to set to 1, and it used to say XP per hit: 1 but now it says 0.02 when doing /statinfo. 

"Points Per Hit": {
"ACQUIRE": 1.0,
"MINING": 1.0,
"SKINNING": 1.0,
"WOODCUTTING": 1.0

Picture of /statinfo - https://gyazo.com/84cf61a33817111515fa0126f5272dac

A new player joined the server and when they do /statinfo, it tells them 1 xp per hit. 
I tried disconnecting and reconnecting and Im still at 0.02.

Try setting this one to false, it was the cause of a few problems years ago and might be the cause of this one
"Broadcast Enabled Bonus": true,

pookins

Try setting this one to false, it was the cause of a few problems years ago and might be the cause of this one
"Broadcast Enabled Bonus": true,

I just tried this, rebooted the server and no change. Thanks tho for trying to help :)

plugins which change time can break this plugin. from what I see this plugin does work with TimeOfDay. reload ZLevels after the server is already started and see if it works then.